Officials warned that the process could take a long time as Guzman’s lawyers file legal appeals to keep their client in Mexico, where he has already escaped from maximum security prisons twice.
Agents formally notified Guzman that he was wanted in the United States.
In a statement, the Attorney General’s Office said Mexican agents assigned to the international police agency Interpol served two arrest warrants to the drug lord, who is being held at the Altiplano prison following his capture by Mexican marines on Friday.
Guzman’s defence had three days to present arguments against extradition and 20 days to present evidence, beyond the plethora of other appeals they have already started filing.
VIDEO: Dramatic footage shows El Chapo raid https://t.co/PxdOkdXQcC— BBC News (World) (@BBCWorld) January 12, 2016
Guzman’s powerful Sinaloa cartel smuggles multi-ton shipments of cocaine and marijuana as well as manufacturing and transporting methamphetamines and heroin, mostly to the US.
He is wanted in various US states and his July escape deeply embarrassed the government of President Enrique Pena Nieto and strained ties between the countries.
Guzman’s attorney Juan Pablo Badillo has said the defence has already filed six motions to challenge extradition requests.
Badillo said that his client shouldn’t be extradited to the US because “our country must respect national sovereignty, the sovereignty of its institutions to impart justice”.
On Saturday, a Mexican federal law enforcement official said the quickest Guzman could be extradited would be six months, but even that is not likely because of the many appeals filed by his lawyers.
He said the appeals are usually turned down, but each one means a judge has to schedule a hearing.
“That can take weeks or months, and that delays the extradition,” he said. “We’ve had cases that take six years.”
Mexico’s willingness to extradite Guzman is a sharp turnaround from the last time he was captured in 2014, when then-Attorney General Jesus Murillo Karam said the extradition would happen only after he finished his sentence in Mexico in “300 or 400 years”.
Guzman was re-apprehended on Friday after a shootout between gunmen and Mexican marines at the home in Los Mochis, a seaside city in Guzman’s home state of Sinaloa.
Five suspects were killed and six others arrested. One marine was injured.
Mexican authorities say actor Sean Penn’s contacts with Guzman helped them track the fugitive down — even if he slipped away from an initial raid on the hideout where the Hollywood actor apparently met him.
Penn’s article on Guzman was published by Rolling Stone magazine a day after the drug lord’s recapture.
In it, Penn wrote of elaborate security precautions, but also said that as he flew to Mexico on October 2 for the meeting: “I see no spying eyes, but I assume they are there.” He was right.
Describing the capture, Attorney General Arely Gomez said that investigators had been aided in locating Guzman by contacts between his attorneys and “actors and producers” she said were interested in making a film about him.
Marines finally caught him in a residential neighbourhood of Los Mochis, where they’d been monitoring a suspected safe house.
Guzman was able to escape via storm drains and exited a manhole in the street. But he was captured in a vehicle on the highway.